update to 25.11, various fixes, converted to using gnome keyring

flake.lock

@@ -1,25 +1,5 @@
 {
   "nodes": {
-    "auto-cpufreq": {
-      "inputs": {
-        "nixpkgs": [
-          "nixpkgs"
-        ]
-      },
-      "locked": {
-        "lastModified": 1752998173,
-        "narHash": "sha256-ZlYpBp2WOe03UrpjJGz5KTOL/pp7A452hJO/Vc8C4/0=",
-        "owner": "AdnanHodzic",
-        "repo": "auto-cpufreq",
-        "rev": "562278377ffa96f3c1af49c7b499df028ce8d8bd",
-        "type": "github"
-      },
-      "original": {
-        "owner": "AdnanHodzic",
-        "repo": "auto-cpufreq",
-        "type": "github"
-      }
-    },
     "catppuccin": {
       "inputs": {
         "nixpkgs": "nixpkgs"
@@ -66,16 +46,16 @@
         ]
       },
       "locked": {
-        "lastModified": 1749154018,
+        "lastModified": 1764866045,
-        "narHash": "sha256-gjN3j7joRvT3a8Zgcylnd4NFsnXeDBumqiu4HmY1RIg=",
+        "narHash": "sha256-0GsEtXV9OquDQ1VclQfP16cU5VZh7NEVIOjSH4UaJuM=",
         "owner": "nix-community",
         "repo": "home-manager",
-        "rev": "7aae0ee71a17b19708b93b3ed448a1a0952bf111",
+        "rev": "f63d0fe9d81d36e5fc95497217a72e02b8b7bcab",
         "type": "github"
       },
       "original": {
         "owner": "nix-community",
-        "ref": "release-25.05",
+        "ref": "release-25.11",
         "repo": "home-manager",
         "type": "github"
       }
@@ -114,11 +94,11 @@
     },
     "nixpkgs-unstable": {
       "locked": {
-        "lastModified": 1763966396,
+        "lastModified": 1764667669,
-        "narHash": "sha256-6eeL1YPcY1MV3DDStIDIdy/zZCDKgHdkCmsrLJFiZf0=",
+        "narHash": "sha256-7WUCZfmqLAssbDqwg9cUDAXrSoXN79eEEq17qhTNM/Y=",
         "owner": "nixos",
         "repo": "nixpkgs",
-        "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+        "rev": "418468ac9527e799809c900eda37cbff999199b6",
         "type": "github"
       },
       "original": {
@@ -130,16 +110,16 @@
     },
     "nixpkgs_2": {
       "locked": {
-        "lastModified": 1763948260,
+        "lastModified": 1764831616,
-        "narHash": "sha256-dY9qLD0H0zOUgU3vWacPY6Qc421BeQAfm8kBuBtPVE0=",
+        "narHash": "sha256-OtzF5wBvO0jgW1WW1rQU9cMGx7zuvkF7CAVJ1ypzkxA=",
         "owner": "nixos",
         "repo": "nixpkgs",
-        "rev": "1c8ba8d3f7634acac4a2094eef7c32ad9106532c",
+        "rev": "c97c47f2bac4fa59e2cbdeba289686ae615f8ed4",
         "type": "github"
       },
       "original": {
         "owner": "nixos",
-        "ref": "nixos-25.05",
+        "ref": "nixos-25.11",
         "repo": "nixpkgs",
         "type": "github"
       }
@@ -182,7 +162,6 @@
     },
     "root": {
       "inputs": {
-        "auto-cpufreq": "auto-cpufreq",
         "catppuccin": "catppuccin",
         "home-manager": "home-manager",
         "nixos-hardware": "nixos-hardware",

flake.nix

@@ -2,23 +2,19 @@
   description = "NixOS system flake.";
 
   inputs = {
-    nixpkgs.url = "github:nixos/nixpkgs/nixos-25.05";
+    nixpkgs.url = "github:nixos/nixpkgs/nixos-25.11";
     nixpkgs-unstable.url = "github:nixos/nixpkgs/nixos-unstable";
     home-manager = {
-        url = "github:nix-community/home-manager/release-25.05";
+        url = "github:nix-community/home-manager/release-25.11";
         inputs.nixpkgs.follows = "nixpkgs";
     };
     # bonus inputs
     catppuccin.url = "github:catppuccin/nix";
     nur.url = "github:nix-community/NUR";
-    auto-cpufreq = {
-      url = "github:AdnanHodzic/auto-cpufreq";
-      inputs.nixpkgs.follows = "nixpkgs";
-    };
     nixos-hardware.url = "github:NixOS/nixos-hardware/master";
   };
 
-  outputs = { self, nixpkgs, nixpkgs-unstable, catppuccin, nur, home-manager, auto-cpufreq, nixos-hardware, ... } @ inputs:
+  outputs = { self, nixpkgs, nixpkgs-unstable, catppuccin, nur, home-manager, nixos-hardware, ... } @ inputs:
   let
     inherit (self) outputs;
     system = "x86_64-linux";
@@ -72,7 +68,6 @@
         };
         modules = [
             catppuccin.nixosModules.catppuccin
-            auto-cpufreq.nixosModules.default
             # Setup home manager
             inputs.home-manager.nixosModules.home-manager {
                 home-manager.useGlobalPkgs = true;

nate-work/modules/home-manager/home.nix

@@ -44,7 +44,6 @@
   hyprhome = {
     enable = true;
     homePackages = with pkgs; [
-      chromium
       #
       # Dev Tools
       #
@@ -56,19 +55,19 @@
       jq
       gnumake
       mariadb
-      lsp-ai
-      python3
-      nodejs_24
       cmake
+      ## nodejs frontend
+      nodejs_24
+      husky
+      pnpm
+      yarn
+      ## dev services cli
       gh
       awscli2
-      # AI
+      ## AI
       unstable.claude-code
       unstable.opencode
-      # proto
+      ## Go stuff
-      protobuf
-      protoc-gen-dart
-      # Go stuff
       go
       unstable.delve
       gotools
@@ -78,14 +77,6 @@
       go-swag
       trivy
 
-      # clojure
-      jre17_minimal
-      clojure
-      clojure-lsp
-      cljfmt
-      leiningen
-      emacs
-
       ### LSP's
       gopls
       nil
@@ -93,26 +84,19 @@
       nodePackages_latest.bash-language-server
       openscad-lsp
       vscode-langservers-extracted # provides eslint, markdown, json, css, and html lsp
-      python311Packages.python-lsp-server
       yaml-language-server
-      elixir-ls
       ltex-ls
 
       ### Misc
       usbutils
-      openscad
-      libxml2
       nfs-utils
-      # For AnyConnect VPN
-      openconnect
-      networkmanager-openconnect
 
       #
       # Better Unix
       #
       bat
       duf
-      du-dust
+      dust
       fd
       fzf
       lsd
@@ -146,14 +130,12 @@
       #
       # Other
       #
+      chromium
       keepassxc
       obs-studio
-      prusa-slicer
       gnome-disk-utility
-      kdePackages.filelight
       hugo
-      unstable.llama-cpp
+      # unstable.davinci-resolve-studio
-      unstable.davinci-resolve-studio
 
       #
       # Style
@@ -190,10 +172,9 @@
   # Git setup
   programs.git = {
       enable = true;
-      userEmail = email;
+      settings = {
-      userName = fullName;
+        user.name = fullName;
-      extraConfig = {
+        user.email = email;
-        include = { path = "${config.xdg.configHome}/macchiato.gitconfig"; };
         init = { defaultBranch = "main"; };
         merge = { conflictStyle="zdiff3"; };
         pull = { ff = "only"; };
@@ -205,16 +186,18 @@
           };
         };
       };
-      delta = {
+
+  };
+  # Better git diffs with delta
+  programs.delta = {
     enable = true;
+    enableGitIntegration = true;
     options = {
       side-by-side = true;
       hyperlinks = true;
     };
   };
-
+  # direnv for auto nix flake shells 
-  };
-
   programs = {
     direnv = {
       enable = true;
@@ -234,6 +217,9 @@
           theme = "half-life";
       };
       initContent = ''
+          # integrate ssh-agent from gnome keyring
+          export SSH_AUTH_SOCK=/run/user/$UID/gcr/ssh
+
           # direnv setup
           eval "$(direnv hook zsh)"
 

nate-work/modules/hypr/hyprland.nix

@@ -92,8 +92,6 @@ in
           enable = true;
           qemu = {
             swtpm.enable = true;
-            ovmf.enable = true;
-            ovmf.packages = [ pkgs.OVMFFull.fd ];
            };
         };
         spiceUSBRedirection.enable = true;
@@ -127,7 +125,7 @@ in
     programs.xfconf.enable = true;
     programs.regreet.enable = true;
     programs.zsh.enable = true;
-    programs.ssh.startAgent = true;
+    programs.ssh.startAgent = false; # Using GNOME Keyring's gcr-ssh-agent instead
     programs.steam.enable = true;
     programs.wshowkeys.enable = true;
     services.printing = {
@@ -154,7 +152,7 @@ in
       };
     };
     # disable lid switch sleep when plugged into power, laptop docked
-    services.logind.lidSwitchExternalPower = "ignore";
+    services.logind.settings.Login.HandleLidSwitchExternalPower = "ignore";
     # For yubioath desktop
     services.pcscd.enable = true;
     security.polkit.enable = true;

nate-work/modules/vpn-proxy/vpn-proxy.nix

@@ -163,19 +163,7 @@
           }
 
           stop_proxy() {
-              if [ ! -f "$PID_FILE" ]; then
+              if [ -f "$PID_FILE" ]; then
-                  echo "Proxy not running (no PID file)"
-                  # Still try to clean up any orphaned processes
-                  if pgrep -f "ssh -D $SOCKS_PORT" > /dev/null 2>&1; then
-                      echo "Found orphaned SSH process, cleaning up..."
-                      pkill -f "ssh -D $SOCKS_PORT"
-                  fi
-                  
-                  # Disable system proxy anyway
-                  gsettings set org.gnome.system.proxy mode 'none'
-                  return 1
-              fi
-              
                   local pid
                   pid=$(cat "$PID_FILE" 2>/dev/null)
                   
@@ -197,18 +185,39 @@
                           kill -9 "$pid" 2>/dev/null
                       fi
                   else
-                  echo "PID $pid not found, cleaning up..."
+                      echo "PID $pid not found in process list"
                   fi
                   
-              # Also kill by pattern as backup
-              pkill -f "ssh -D $SOCKS_PORT.*$VM_USER@$VM_IP" 2>/dev/null
-              
                   rm -f "$PID_FILE"
+              else
+                  echo "Proxy not running (no PID file found)"
+              fi
               
-              # Disable system proxy
+              # Always clean up orphaned SSH processes
+              if pgrep -f "ssh -D $SOCKS_PORT" > /dev/null 2>&1; then
+                  echo "Cleaning up orphaned SSH processes..."
+                  pkill -f "ssh -D $SOCKS_PORT"
+              fi
+              
+              # Always disable system proxy and clear SOCKS settings
+              echo "Clearing proxy settings..."
               gsettings set org.gnome.system.proxy mode 'none'
+              gsettings set org.gnome.system.proxy.socks host ""
+              gsettings set org.gnome.system.proxy.socks port 0
               
-              echo "✓ VPN proxy stopped"
+              # Verify settings are cleared
+              local proxy_mode
+              proxy_mode=$(gsettings get org.gnome.system.proxy mode 2>/dev/null)
+              if [ "$proxy_mode" = "'none'" ]; then
+                  echo "✓ System proxy disabled"
+              else
+                  echo "⚠ Warning: Could not verify proxy was disabled (current mode: $proxy_mode)"
+              fi
+              
+              echo "✓ VPN proxy stopped and proxy settings cleared"
+              
+              # Return success even if there was no PID file
+              return 0
           }
 
           status_proxy() {